Synlett
DOI: 10.1055/a-2602-6899
letter
Small Molecules in Medicinal Chemistry

Synthesis of 5-Functionalized 1-(Hetero)Aryl-1,2-thiazine 1-Oxides through a CSIC Reaction Strategy

Yaroslav O. Chuchvera
a   Enamine Ltd., Winston Churchill Street 78, Kyiv 02094, Ukraine
b   Taras Shevchenko National University of Kyiv, Volodymyrska Steet 60, Kyiv 01033, Ukraine
,
Oleksandr P. Korobka
a   Enamine Ltd., Winston Churchill Street 78, Kyiv 02094, Ukraine
c   V.N. Karazin Kharkiv National University, Svobody Square 4, Kharkiv 61022, Ukraine
,
Yurii O. Horbatochkin
a   Enamine Ltd., Winston Churchill Street 78, Kyiv 02094, Ukraine
c   V.N. Karazin Kharkiv National University, Svobody Square 4, Kharkiv 61022, Ukraine
,
Eugeniy N. Ostapchuk
a   Enamine Ltd., Winston Churchill Street 78, Kyiv 02094, Ukraine
b   Taras Shevchenko National University of Kyiv, Volodymyrska Steet 60, Kyiv 01033, Ukraine
,
Maria V. Popova
b   Taras Shevchenko National University of Kyiv, Volodymyrska Steet 60, Kyiv 01033, Ukraine
d   Max Planck Institute for Polymer Research, Ackermannweg 10, D-55128 Mainz, Germany
,
Svitlana V. Shishkina
e   Institute of Organic Chemistry, National Academy of Sciences of Ukraine, Murmanska Street 5, Kyiv 02094, Ukraine
f   SSI ‘Institute for Single Crystals’, National Academy of Sciences of Ukraine, Nauky Avenue 60, Kharkiv 61001, Ukraine
,
Yulian M. Volovenko
b   Taras Shevchenko National University of Kyiv, Volodymyrska Steet 60, Kyiv 01033, Ukraine
,
a   Enamine Ltd., Winston Churchill Street 78, Kyiv 02094, Ukraine
b   Taras Shevchenko National University of Kyiv, Volodymyrska Steet 60, Kyiv 01033, Ukraine
› Author Affiliations

This work was funded by Enamine Ltd. Additional funding from the Ministry of Education and Science of Ukraine is also acknowledged.


Dedicated to Prof. José Marco-Contelles for his invaluable contribution to the CSIC reaction.

Abstract

Herein, we report an efficient strategy for the synthesis of C5-functionalized 1-(hetero)aryl-1,2-thiazine 1-oxides (i.e., C5-functionalized six-membered endocyclic sulfoximines) based on the carbanion-mediated sulfonate (or sulfonamide) intermolecular coupling and intramolecular cyclization (CSIC) reaction. The starting compounds are readily available 2,2-disubstituted 3-bromopropanenitriles and imino(methyl)(hetero/aryl)-λ6-sulfanones, and the reaction is performed in a one-pot fashion. The method works well and provides previously unreported spirocyclic and S-heteroaryl-substituted 1,2-thiazine 1-oxides. These compounds are designed as multi-target small molecules and a preliminary in silico study indicates their good binding affinity to CLK4 and MAO B – the receptors associated with cancer and neurodegenerative diseases.

Supporting Information



Publication History

Received: 28 February 2025

Accepted after revision: 07 May 2025

Accepted Manuscript online:
07 May 2025

Article published online:
18 June 2025

© 2025. Thieme. All rights reserved

Georg Thieme Verlag KG
Oswald-Hesse-Straße 50, 70469 Stuttgart, Germany

 
  • References and Notes

    • 4a Kwon M, Kim G, Kim R, Kim K.-T, Kim ST, Smith S, Mortimer PG. S, Hong JY, Loembé A.-B, Irurzun-Arana I, Koulai L, Kim K.-M, Kang WK, Dean E, Park W.-Y, Lee J. J. Immunother. Cancer 2022; 10: e005041
    • 4b Mavroeidi D, Georganta A, Panagiotou E, Syrigos K, Souliotis VL. Int. J. Mol. Sci. 2024; 25: 2767
  • 10 Harmata M, Pavri N. Angew. Chem. Int. Ed. 1999; 38: 2419
  • 11 Battula SR. K, Subbareddy GV, Chakravarthy IE, Saravanan V. RSC Adv. 2016; 6: 55710
    • 12a Marco JL, Ingate ST, Chinchón PM. Tetrahedron 1999; 55: 7625
    • 12b Marco JL, Ingate ST, Jaime C, Beá I. Tetrahedron 2000; 56: 2523
    • 12c Postel D, Van Nhien AN, Marco JL. Eur. J. Org. Chem. 2003; 3713
    • 12d Dobrydnev AV, Marco-Contelles J. Eur. J. Org. Chem. 2021; 1229
    • 12e Chuchvera YO, Tararina V, Chuchvera I, Ostapchuk EN, Popova MV, Shishkina SV, Volovenko YM, Dobrydnev AV. Synlett 2025; 36: 92
  • 13 2,2-Disubstituted-3-((methyl(hetero/aryl)(oxo)-λ6-sulfaneylidene)amino)propanenitriles 2c–e; General Procedure Imino(methyl)(hetero/aryl)-λ6-sulfanone 4a,b (2.5 mmol, 1 equiv) was dissolved in DMF (3 mL) followed by the addition of t-BuOK (421 mg, 3.75 mmol, 1.5 equiv) in one portion. The obtained mixture was then stirred at ambient temperature for 1 h. Next, 2,2-disubstituted 3-bromopropanenitrile 3a,c,d (3.75 mmol, 1.5 equiv) was added dropwise and the resulting mixture was stirred at 40 °C overnight (the progress of the reaction was monitored by TLC). The mixture was poured into ice-cold saturated aq. NH4Cl (15 mL) and extracted with EtOAc (3 × 5 mL). The organic layer was dried (Na2SO4) and evaporated under reduced pressure to give the crude product, which was purified by HPLC (using gradient elution with acetonitrile–water).
  • 14 1-(((Methyl(oxo)(phenyl)-λ6-sulfaneylidene)amino)methyl)cyclobutane-1-carbonitrile (2с) The product was obtained from (653 mg) and 4a (388 mg). Yield: 484 mg (1.95 mmol, 78%); yellowish amorphous solid. 1H NMR (400 MHz, CDCl3): δ = 7.90 (d, J = 7.9 Hz, 2 H), 7.60–7.50 (m, 3 H), 3.16 (d, J = 12.2 Hz, 1 H), 3.07 (s, 3 H), 2.96 (d, J = 12.2 Hz, 1 H), 2.46–2.35 (m, 2 H), 2.28–2.24 (m, 1 H), 2.04–1.88 (m, 3 H). 13C{1H} NMR (126 MHz, CDCl3): δ = 139.0, 133.2, 129.6, 128.7, 49.3, 45.1, 37.4, 29.6, 29.5, 16.6. MS (APCI): m/z = 249 [М + Н]+.
  • 15 5-Enamino 1-(Hetero)aryl-1,2-thiazine 1-Oxides 1c,e (Two-Step Method); General Procedure 2,2-Disubstituted-3-((methyl(hetero/aryl)(oxo)-λ6-sulfaneylidene)amino)propanenitrile 2c,e (1.5 mmol, 1 equiv) was dissolved in DMF (2 mL) followed by the addition of t-BuOK (252 mg, 2.25 mmol, 1.5 equiv). The obtained mixture was then stirred at 60 °C overnight. Next, the mixture was poured into ice-cold saturated aq. NH4Cl (8 mL) and extracted with EtOAc (3 × 4 mL). The organic layer was dried (Na2SO4) and evaporated under reduced pressure to give the crude product, which was purified by HPLC (using gradient elution with acetonitrile–water).
  • 16 C5-Functionalized 1-(Hetero)aryl-1,2-thiazine 1-Oxides 1a–c,e–g and 5d,h (One-Pot Method); General Procedure Imino(methyl)(hetero/aryl)-λ6-sulfanone 4ac (2.5 mmol, 1 equiv) was dissolved in DMF (3 mL) followed by the addition of t-BuOK (421 mg, 3.75 mmol, 1.5 equiv) in one portion. The obtained mixture was then stirred at ambient temperature for 1 h. Next, 2,2-disubstituted 3-bromopropanenitrile 3ad (3.75 mmol, 1.5 equiv) was added dropwise and the resulting mixture was stirred at 40 °C overnight (the progress of the reaction was monitored by TLC). After the starting compounds had been consumed, the reaction mixture was cooled to room temperature followed by the addition of another portion of t-BuOK (421 mg, 3.75 mmol, 1.5 equiv), and the obtained mixture was then stirred at 60 °C overnight. Next, the mixture was poured into ice-cold saturated aq. NH4Cl (15 mL) and extracted with EtOAc (3 × 5 mL). The organic layer was dried (Na2SO4) and evaporated under reduced pressure to give the crude product, which was purified by HPLC (using gradient elution with acetonitrile–water).
  • 17 9-Amino-7-phenyl-7-thia-6-azaspiro[3.5]nona-6,8-diene 7-Oxide (1c) The product was obtained from 2c (373 mg) following the two-step method; yield: 175 mg (0.71 mmol, 47%). The same product was also obtained from 3c (653 mg) and 4a (388 mg) following the one-pot procedure; yield 236 mg (0.95 mmol, 38%); beige powder. 1H NMR (400 MHz, CDCl3): δ = 7.83 (d, J = 7.2 Hz, 2 H), 7.41 (t, J = 7.2 Hz, 1 H), 7.35 (t, J = 7.2 Hz, 2 H), 5.08 (s, 1 H), 4.99 (s, 2 H), 3.59 (s, 2 H), 2.44–2.36 (m, 1 H), 2.29–2.21 (m, 1 H), 2.12–2.01 (m, 2 H), 1.92–1.85 (m, 1 H), 1.73–1.64 (m, 1 H). 13C{1H} NMR (126 MHz, CDCl3): δ = 163.5, 143.8, 131.7, 128.6, 127.9, 88.9, 51.2, 39.0, 29.6, 25.6, 15.9. MS (APCI): m/z = 249 [М + Н]+.
  • 18 CCDC 2416330 contains the supplementary crystallographic data for this paper. The data can be obtained free of charge from The Cambridge Crystallographic Data Centre via www.ccdc.cam.ac.uk/structures
  • 19 2,2-Disubstituted-3-((methyl(hetero/aryl)(oxo)-λ6-sulfaneylidene)amino)propanoic Acids 6c,e–h; General Procedure A solution of C5-functionalized 1-(hetero)aryl-1,2-thiazine 1-oxide 1c,eg or 5h (0.2 mmol) in a mixture of HOAc (1 mL) and water (1 mL) was heated at 60 °C overnight. The mixture was then evaporated under reduced pressure, triturated with hexane (5 mL), filtered and washed twice with a few drops of water to give the product 6c,eh.
  • 20 1-(((Methyl(oxo)(phenyl)-λ6-sulfaneylidene)amino)methyl)cyclobutane-1-carboxylic Acid (6c) The product was obtained from 1c (50 mg). Yield: 47 mg (0.176 mmol, 88%); white solid. 1H NMR (400 MHz, CDCl3): δ = 7.93 (d, J = 7.2 Hz, 2 H), 7.66 (t, J = 7.2 Hz, 1 H), 7.60 (t, J = 7.2 Hz, 2 H), 3.25 (d, J = 11.9 Hz, 1 H), 3.21 (s, 3 H), 3.05 (d, J = 11.9 Hz, 1 H), 2.43 (dt, J = 19.9, 9.7 Hz, 2 H), 2.02–1.97 (m, 1 H), 1.88 (dt, J = 19.9, 9.7 Hz, 2 H), 1.79–1.69 (m, 1 H). 13C{1H} NMR (151 MHz, CDCl3): δ = 176.6, 138.0, 133.6, 129.8, 128.6, 48.7, 44.7, 28.2, 27.7, 21.1, 15.2. MS (APCI): m/z = 266 [М – Н].
  • 21 (E)-N,N-Dimethyl-N′-(7-(1-methyl-1H-1,2,3-triazol-5-yl)-7-oxido-7λ6-thia-6-azaspiro[3.5]nona-6,8-dien-9-yl)formimidamide (7f) An excess of DMF–DMA (894 mg, 1 mL, 7.5 mmol) was added to a solution of enamino sulfoximine 1f (63 mg, 0.25 mmol) in toluene (5 mL) and the obtained mixture was refluxed overnight. The mixture was then evaporated under reduced pressure and triturated with hexane (5 mL). The obtained precipitate was filtered and washed with hexane (5 mL) to give the title compound. Yield: 66 mg (0.21 mmol, 85%); beige solid. 1H NMR (400 MHz, DMSO-d 6): δ = 8.03 (d, J = 3.2 Hz, 1 H), 7.85 (s, 1 H), 5.76 (d, J = 3.2 Hz, 1 H), 4.11 (s, 3 H), 3.55 (d, J = 13.0 Hz, 1 H), 3.43 (d, J = 13.0 Hz, 1 H), 3.07 (s, 3 H), 3.00 (s, 3 H), 2.65–2.57 (m, 1 H), 2.14–2.05 (m, 1 H), 2.01–1.91 (m, 2 H), 1.86–1.75 (m, 1 H), 1.67–1.57 (m, 1 H). 13C{1H} NMR (126 MHz, DMSO-d 6): δ = 173.2, 154.3, 139.4, 136.4, 96.2, 51.5, 40.3, 36.0, 34.3, 27.8, 26.5, 15.2. MS (APCI): m/z = 309 [М + Н]+.
  • 22 Siegel RL, Giaquinto AN, Jemal A. CA: Cancer J. Clin. 2024; 74: 12
    • 26a Lee JY, Yun J.-S, Kim W.-K, Chun H.-S, Jin H, Cho S, Chang JH. Biomed. Res. Int. 2019; 6125068
    • 26b Borad MJ, Bai L, Richards D, Mody K, Hubbard J, Rha SY, Soong J, McCormick D, Tse E, O’Brien D, Bayat A, Ahn D, Davis SL, Park JO, Oh D. Hepatology 2023; 77: 760
    • 26c Haga Y, Ray R, Ray RB. Mol. Carcinog. 2025; 64: 72
    • 27a Löhle M, Storch A. Expert Opin. Pharmacother. 2008; 9: 2881
    • 27b Magyar K. In International Review of Neurobiology, Vol. 100. Youdim MB. H, Douce P. Academic Press; London: 2011: 65
    • 27c Fowler JS, Logan J, Volkow ND, Shumay E, McCall-Perez F, Jayne M, Wang G.-J, Alexoff DL, Apelskog-Torres K, Hubbard B, Carter P, King P, Fahn S, Gilmor M, Telang F, Shea C, Xu Y, Muench L. Neuropsychopharmacology 2015; 40: 650