Plant Biol (Stuttg) 2000; 2(2): 218-228
DOI: 10.1055/s-2000-9460
Original Paper
Georg Thieme Verlag Stuttgart ·New York

Molecular Phylogeny of Caryophyllidae s.l. Based on MatK Sequences with Special Emphasis on Carnivorous Taxa

H. Meimberg 1 , P. Dittrich 2 , G. Bringmann 3 , J. Schlauer 3 , G. Heubl 1
  • 1 Institut für Systematische Botanik, Ludwig Maximilians Universität, München, Germany
  • 2 Institut für Botanik, Ludwig Maximilians Universität, München, Germany
  • 3 Institut für Organische Chemie, Julius Maximilians Universität, Würzburg, Germany
Further Information

Publication History

September 2, 1999

November 30, 1999

Publication Date:
31 December 2000 (online)

Abstract:

Despite intensive morphological, chemical and cladistic studies on Caryophyllidae, the circumscription of this subclass and the interfamilial relationships are still under discussion. Using comparative sequencing of the chloroplast matK gene, hypotheses of relationships between the carnivorous Droseraceae, Nepenthaceae and Dioncophyllaceae and ten other families of the Caryophyllidae s.l. were tested and compared with previously published cladograms based on rbcL, 18S rDNA and ORF2280 sequences. Parsimony analyses indicate two well-differentiated clades. One strongly supported clade comprises the carnivorous families Droseraceae and Nepenthaceae, along with its close relatives Dioncophyllaceae and Ancistrocladaceae. The second clade is restricted to the Polygonaceae, Plumbaginaceae, Tamaricaceae and Frankeniaceae. The Simmondsiaceae are more closely related to Caryophyllales and are at the base of the remaining taxa. Results of this analysis suggest that carnivory within Caryophyllidae s.l. has a monophyletic origin and, with the exception of Triphyophyllum, this syndrome was lost in the taxa of Dioncophyllaceae and Ancistrocladaceae. The exclusion of Drosophyllum from Droseraceae suggests no close relationship with this family. Finally, the data support a sister group relationship between the Plumbaginaceae and Polygonaceae and the Frankeniaceae and Tamaricaceae. An extensive survey of the rpl2 intron via PCR amplification indicates that the intron is absent from chloroplast genomes of Droseraceae and all taxa of Caryophyllales, but is present in Drosophyllum. Consequently, there is evidence for a multiple loss of the intron and strong support that Drosophyllum has affinities outside the Droseraceae. Our sequence data corroborate many aspects of recent cladistic analyses based predominantly on rbcL sequences. This study shows that matK sequences are useful for’phylogenetic inference among closely related members of Caryophyllidae.

References

  • 01 Albert,  V. A.,, Williams,  S. E.,, and Chase,  M. W.. (1992);  Carnivorous plants: Phylogeny and structural evolution.  Science. 257 1491-1495
  • 02 Albert,  V. A., and Stevenson,  D. W. M.. (1996);  Morphological cladistics of the Nepenthales.  Amer. J. Bot.. 83 (6) 135
  • 03 Anderson,  J. A. R., and Muller,  J.. (1975);  Palynological study of a Holocene peat and a Miocene coal deposit from NW Borneo.  Rev. Palaeobot. Palynol.. 19 291-351
  • 04 Basak,  R. K., and Subramanyam,  K.. (1966);  Pollen grains of some species of Nepenthes. .  Phytomorphology. 16 334-338
  • 05 Bringmann,  G., and Pokorny,  F.. (1995) The Naphthylisoquinoline Alkaloids. The Alkaloids, Vol 46. Academic Press
  • 06 Bringmann,  G.,, Francois,  G.,, Ake Assi,  L.,, and Schlauer,  J.. (1998);  The alkaloids of Triphyophyllum peltatum (Dioncophyllaceae).  Chimia. 52 18-28
  • 07 Chase,  M. W.,, Soltis,  D. E.,, Olmstead,  R. G. and 40 others. (1993);  Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. .  Ann. Missouri Bot. Gard.. 80 (3) 528-580
  • 08 Chanda,  S.. (1965);  The pollen morphology of Droseraceae with special reference to taxonomy.  Pollen Spores. 7 509-528
  • 09 Chrtek,  J.,, Slavikova,  Z.,, and Studnicka,  M.. (1989);  Beitrag zur Leitbündelanordnung in den Kronblättern von ausgewählten Arten der fleischfressenden Pflanzen.  Preslia (Praha). 61 107-124
  • 10 Cronquist,  A.. (1988) An integrated system of classification of flowering plants. New York; Columbia Univ. Press
  • 11 Dahlgren,  G.. (1989) The last Dahlgrenogram. System of classification of the dicotyledons. Plant Taxonomy, Phytogeography and Related Subjects (The Davis and Hedge Festschrift). Tan, K., ed. Edinburgh; University Press 249-260
  • 12 Diels,  L.. (1906) Droseraceae. Das Pflanzenreich. Engler, A., ed. Leipzig; Engelmann
  • 13 Downie,  S. R.,, Katz-Downie,  D. S.,, and Kyung-Jin,  C.. (1997);  Relationships in the Caryophyllales as suggested by phylogenetic analyses of partial chloroplast DNA ORF2280 homolog sequences.  Amer. J. Bot.. 84 (2) 253-273
  • 14 Downie,  S. R. et al.. (1991);  Six independent losses of the chloroplast DNA rpl2 intron in dicotyledons: molecular and phylogenetic implications.  Evolution. 45 1245-1259
  • 15 Downie,  S. R., and Palmer,  J. D.. (1994);  A chloroplast DNA phylogeny of Caryophyllales based on structural and inverted repeat restriction site variation.  Syst. Bot.. 19 (2) 236-252
  • 16 Doyle,  J. J., and Doyle,  J. L.. (1987);  A rapid DNA isolation procedure from small quantities of fresh leaf tissue.  Phytochem. Bull. Bot. Soc. Amer.. 19 11-15
  • 17 Erdtman,  G.. (1958) A note on the pollen morphology in the Ancistrocladaceae and Dioncophyllaceae. Zürich; Separat aus Veröff. Geobot. Inst. Rübel, Heft 33
  • 18 Fay,  M. F.,, Cameron,  K. M.,, Prance,  G. T.,, Lledo,  M. D.,, and Chase,  M. W.. (1997);  Familial relationships of Rhabdodendron (Rhabdodendraceae). Plastid rbcL sequences indicate a caryophyllid placement.  Kew Bulletin. 52 (4) 923-932
  • 19 Felsenstein,  J.. (1981);  Evolutionary trees from DNA sequences: A maximum likelihood approach.  J. Mol. Evol.. 17 368-376
  • 20 Felsenstein,  J.. (1985);  Confidence limits on phylogenies: an approach using the bootstrap.  Evolution. 39 783-791
  • 21 Giannasi,  D. E.,, Zurawski,  G.,, Learn,  G.,, and Clegg,  M. T.. (1992);  Evolutionary relationships of the Caryophyllidae based on comparative rbcL sequences.  Syst. Bot.. 17 1-15
  • 22 Gottwald,  H., and Parameswaran,  N.. (1968);  Das sekundäre Xylem und die systematische Stellung der Ancistrocladaceae und Dioncophyllaceae.  Bot. Jahrb. Syst.. 88 49-69
  • 23 Heubl,  G. R., and Wistuba,  A.. (1995);  A cytological study of the genus Nepenthes L. (Nepenthaceae).  Sendtnera. 4 169-174
  • 24 Johnson,  L. A., and Soltis,  D. E.. (1994);  matK DNA sequences and phylogenetic reconstruction in Saxifragaceae s. str.  Syst. Bot.. 19 143-156
  • 25 Johnson,  L. A., and Soltis,  D. E.. (1995);  Phylogenetic inference in Saxifraga sensu stricto and Gilia (Polemoniaceae) using matK sequences.  Ann. Missouri Bot. Gard.. 82 149-175
  • 26 Kondo,  K.. (1973);  The chromosome numbers of Striga asiatica and Triphyophyllum peltatum. .  Phyton (Buenos Aires). 31 1
  • 27 Krutzsch,  W.. (1985);  Über Nepenthes-Pollen im europäischen Tertiär.  Gleditschia. 13 89-93
  • 28 Krutzsch,  W.. (1988);  Palaeogeography and historical phytogeography (palaeochorology) in the Neophyticum.  Plant Syst. Evol.. 162 5-61
  • 29 Lledo,  M. D.,, Crespo,  M. B.,, Cameron,  K. M.,, Fay,  M. F.,, and Chase,  M. W.. (1998);  Systematics of Plumbaginaceae based upon analysis of rbcL sequence data.  Syst. Bot.. 23 (1) 21-29
  • 30 Mangeot,  S., and Mangeot,  G.. (1962);  Enquete sur les nombres chromosomique dans une collection d'especes tropicales.  Rev. Cyt. and Biol. Veg.. 25 433
  • 31 Metcalfe,  C. R.. (1951);  The anatomical structure of the Dioncophyllaceae in relation to the taxonomic affinities of the family.  Kew Bulletin. 6 351-368
  • 32 Nakai,  T.. (1949);  Classes, Ordines, Familiae, Subfamiliae, Tribus, Genera nov quae attinet ad plantas Koreanas.  Journal of Japanese Botany. 24 8-14
  • 33 Nandi,  O.,, Chase,  M. W.,, and Endress,  P. K.. (1998);  A combined cladistic analysis of angiosperms using rbcL and non-molecular data sets.  Ann. Missouri Bot. Gard.. 79 249-265
  • 34 Neuhaus,  H., and Link,  G.. (1987);  The chloroplast tRNALys (UUU) gene from mustard (Sinapis alba) contains a class II intron potentially coding for a maturase-related polypeptide.  Current Genetics. 11 251-257
  • 35 Nicholas,  K. B. et al.. (1997);  GeneDoc: Analysis and Visualization of Genetic Variation.  EMBNEW. NEWS. 4 14
  • 36 Olsen,  G. J.,, Matsuda,  H.,, Hagstrom,  R.,, and Overbeek,  G.. (1994);  FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.  Comput. Appl. Biosci.. 10 41-48
  • 37 Rettig,  J. H.,, Wilson,  H. D.,, and Manhart,  J.. (1992);  Phylogeny of the Caryophyllales - gene sequences data.  Taxon. 41 201-209
  • 38 Schlauer,  J.. (1997);  “New” data relating to the evolution and phylogeny of some carnivorous plant families.  Carniv. Pl. Newslett.. 26 34-38
  • 39 Schmid,  R.. (1964);  Die systematische Stellung der Dioncophyllaceen.  Bot. Jahrb. Syst.. 83 1-56
  • 40 Schmid-Hollinger,  R.. (1971);  Nepenthes Studien II. Die Haare der Nepenthaceen und ihre phylogenetische Bedeutung.  Bot. Jahrb. Syst.. 91 61-90
  • 41 Schmid-Hollinger,  R.. (1979);  Die Kannenformen der westlichen Nepenthes-Arten.  Bot. Jahrb. Syst.. 100 379-405
  • 42 Shinozaki,  K. et al.. (1986);  The complete nucleotide sequence of tobacco chloroplast genome: its gene organization and expression.  Journal Embo. 5 2043-2049
  • 43 Small,  J. K.. (1933) Flora of the southeastern United States. New York; Published by the author
  • 44 Soltis,  D. E. et al.. (1997);  Angiosperm phylogeny inferred from 18S ribosomal DNA sequences.  Ann. Missouri Bot. Gard.. 84 1-49
  • 45 Swofford,  D. L.. (1993) Phylogenetic analysis using parsimony, Version 3.1.1. Champaign, IL; Computer program distributed by the Illinois Natural History survey
  • 46 Williams,  A. E.,, Albert,  V. A.,, and Chase,  M. W.. (1994);  Relationships of Droseraceae: A cladistic analysis of rbcL sequence and morphological data.  Amer. J. Bot.. 81 (8) 1027-1037
  • 47 Zurawski,  G.,, Bottomley,  W.,, and Whitfeld,  P. R.. (1984);  Junctions of the large single copy region and the inverted repeats in Spinacia oleracea and Nicotiana debneyi chloroplast DNA: sequences of the genes for tRNAHis and ribosomal proteins S19 and L2.  Nucleic Acids Research. 12 6547-6558
  • 48 Zurawski,  G., and Clegg,  M. T.. (1987);  Evolution of higher-plant chloroplast DNA-encoded genes: Implications for structure-function and phylogenetic studies.  Ann. Rev. Plant. Physiol.. 38 391-418

G. Heubl

Institut für Systematische Botanik Universität München

Menzinger Str. 67

80638 München

Germany

Section Editor: M. Hasebe

Email: heubl@botanik.biologie.uni-muenchen.de

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