Thromb Haemost 2017; 117(08): 1455-1464
DOI: 10.1160/TH17-02-0085
Coagulation and Fibrinolysis
Schattauer GmbH

F7 gene variants modulate protein levels in a large cohort of patients with factor VII deficiency

Results from a genotype-phenotype study
Gabriele Quintavalle
1   Regional Reference Centre for Inherited Bleeding Disorders, University Hospital of Parma, Parma, Italy
,
Federica Riccardi
1   Regional Reference Centre for Inherited Bleeding Disorders, University Hospital of Parma, Parma, Italy
,
Gianna Franca Rivolta
1   Regional Reference Centre for Inherited Bleeding Disorders, University Hospital of Parma, Parma, Italy
,
Davide Martorana
2   Genetic Unit, University Hospital of Parma, Parma, Italy
,
Caterina Di Perna
1   Regional Reference Centre for Inherited Bleeding Disorders, University Hospital of Parma, Parma, Italy
,
Antonio Percesepe
2   Genetic Unit, University Hospital of Parma, Parma, Italy
,
Annarita Tagliaferri
1   Regional Reference Centre for Inherited Bleeding Disorders, University Hospital of Parma, Parma, Italy
,
on behalf of the Ad-Hoc Study Group › Author Affiliations
Further Information

Publication History

Received: 06 February 2017

Accepted after major revision: 10 April 2017

Publication Date:
22 November 2017 (online)

Summary

Congenital factor VII (FVII) deficiency is a rare bleeding disorder caused by mutations in F7 gene with autosomal recessive inheritance. A clinical heterogeneity with poor correlation with FVII:C levels has been described. It was the objective of this study to identify genetic defects and to evaluate their relationships with phenotype in a large cohort of patients with FVII:C<50%. One hundred twenty-three probands were genotyped for F7 mutations and three polymorphic variants and classified according to recently published clinical scores. Forty out of 123 patients (33?%) were symptomatic (43 bleedings). A severe bleeding tendency was observed only in patients with FVII:C<0.10%. Epistaxis (11%) and menorrhagia (32% of females in fertile age) were the most frequent bleedings. Molecular analysis detected 48 mutations, 20 not reported in the F7 international databases. Most mutations (62%) were missense, large deletions were 6.2%. Compound heterozygotes/homozygotes for mutations presented lower FVII:C levels compared to the other classes (Chi2=43.709, p<0,001). The polymorphisms distribution was significantly different among the three F7 genotypic groups (Chi2=72.289, p<0,001). The presence of truncating mutations was associated with lowest FVII:C levels (Chi2=21.351, p=0.002). This study confirms the clinical and molecular variability of the disease and the type of symptoms. It shows a good correlation between the type of F7 mutation and/or polymorphisms and FVII:C levels, without a direct link between FVII:C and bleeding tendency. The results suggest that large deletions are underestimated and that they represent a common mechanism of F7 gene inactivation which should always be investigated in the diagnostic testing for FVII deficiency.

 
  • References

  • 1 Perry DJ. Factor VII Deficiency. Br J Haematol 2002; 118: 689-700.
  • 2 O'Hara PJ, Grant FJ, Haldeman BA. et al. Nucleotide sequence of the gene coding for human factor VII, a vitamin K–dependent protein participating in blood coagulation. Proc Natl Acad Sci USA 1986; 83: 2412-2416.
  • 3 Mariani G, Dolce A. Congenital factor VII deficiency. In: Textbook of Hemophilia. 2nd ed. Wiley-Blackwell; 2010: 341-347.
  • 4 Mannucci PM, Duga S, Peyvandi F. Recessively inherited coagulation disorders. Blood 2004; 104: 1243-1252.
  • 5 Morrissey J. Tissue Factor and factor VII initiation of coagulation. In: Haemostasis and Thrombosis. Basic principles and Clinical Practice. 4th ed.. Lippincot Williams & Wilkins; 2001: 89-96.
  • 6 Mariani G, Herrmann FH, Dolce A. et al. Clinical phenotypes and factor VII genotype in congenital factor VII deficiency. Thromb Haemost 2005; 93: 481-487.
  • 7 La Pecorella M, Mariani G. For international Registry on Congenital Factor VII Deficiency. Factor VII deficiency: defining the clinical picture and optimizing therapeutic options. Haemophilia 2008; 14: 1170-1175.
  • 8 Beroud C, Hamroun D, Collod-Beroud G. et al. UMD (Universal Mutation Database): 2005 update. Hum Mutat 2005; 26: 184-191.
  • 9 Mc Vey J, Boswell E, Mumford AD. et al. Factor VII deficiency and the FVII mutation database. Hum Mutat 2001; 17: 3-17.
  • 10 Triplett DA, Brandt JT, Batard MA. et al. Hereditary factor VII deficiency: heterogeneity defined by combined functional and immunochemical analysis. Blood 1985; 66: 1284-1287.
  • 11 Giansily-Blaizot M, Verdier R, Biron-Andreani C. et al. Analysis of biological phenotypes from 42 patients with inherited factor FVII deficiency: can biological tests predict the bleeding risk?. Haematologica 2004; 89: 704-709.
  • 12 Peyvandi F, Palla R, Menegatti M. et al. Coagulation factor activity and clinical bleeding severity in rare bleeding disorders: results from the European Network of Rare Bleeding Disorders. J Thromb Haemost 2012; 10: 615-621.
  • 13 Giansily-Blaizot M, Schved JF. Potential predictors of bleeding risk in inherited factor VII deficiency. Thromb Haemost 2005; 94: 901-906.
  • 14 Peyvandi F, Di Michele D, Bolton-Maggs PHB. et al. Classification of rare bleeding disorders based on the association between coagulant factor activity and clinical bleeding severity. J Thromb Haemost 2012; 10: 1938-1943.
  • 15 Tagliaferri A, Rivolta GF, Biasoli C. et al. A web-based registry of inherited bleeding disorders in the region of Emilia-Romagna: results at three and a half years. Haemophilia 2008; 14: 343-354.
  • 16 Riccardi F, Tagliaferri A, Martorana D. et al. Spectrum of F8 gene mutations in haemophilia A patients from a region of Italy: identification of 23 new mutations. Haemophilia 2010; 16: 791-798.
  • 17 Cho MH, Ciulla D, Klandermann BJ. et al. High-resolution melting curve analysis of genomic and whole-genome amplified DNA. Clin Chem 2008; 54: 2055-2058.
  • 18 Den Dunnen JT, Dalgleish R, Maglott DR. et al. Human Genome Variation Society (HGVS), the Human Variome Project (HVP) and the Human Genome Organisation (HUGO).HGVS Recommendations for the Description of Sequence Variants: 2016 Update. Hum Mutat 2016; 37: 564-569.
  • 19 Schouten JP, McElgunn CJ, Waaijer R. et al. Relative quantification of 40 nucleic acid sequences by Multiplex ligation-dependent probe amplification. Nucleic Acids Res 2005; 30: e57
  • 20 The European Association for Haemophilia and Allied Disorders (EAHAD). Coagulation Factors Variant Database for Factor VII. Available at http://www.factorvii.org Accessed March 7, 2017.
  • 21 Aken BL, Ayling S, Barrell D. et al. The Ensembl gene annotation system. Database (Oxford) 2016 2016 baw093. Available at: http://www.ensembl.org Accessed March 7, 2017.
  • 22 Adzhubei IA, Schmidt S, Peshkin L. et al. A method and server for predicting damaging missense mutations. Nat Methods 2010; 07 (04) 248-249 Available at: http://genetics.harvard.edu/pph2/ Accessed September 5, 2016.
  • 23 Sabater-Lleal M, Chillon M, Howard TE. et al. Functional analysis of the genetic variability in the F7 gene promoter. Atherosclerosis 2007; 195: 262-268.
  • 24 Hunault M, Arbini AA, Lopaciuk S. et al. The Arg353Gln polymorphism reduces the level of coagulation factor VII. In vivo and in vitro studies. Arterioscler Thromb Vasc Biol 1997; 17: 2825-2829.
  • 25 Rivas MA, Pirinen M, Conrad DF. et al. Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome. Science 2015; 348: 666-669.
  • 26 Castoldi E, Govers-Riemslag JW, Pinotti M. et al. Coinheritance of Factor V (FV) Leiden enhances thrombin formation and is associated with a mild bleeding phenotype in patients homozygous for the FVII 9726+5G>A (FVII Lazio) mutation. Blood 2003; 102: 4014-4020.
  • 27 Rabelo FY, Jardim LL, Landau MB. et al. The molecular basis of low activity levels of coagulation factor VII: a Brazilian cohort. Hemophilia 2015; 21: 670-680.
  • 28 Borhani M, Boijout H, Pellequer JL. et al. Genotype and phenotype relationships in 10 Pakistani unrelated patients with inherited factor VII deficiency. Haemophilia 2013; 19: 893-897.
  • 29 Millar DS, Kemball-Cook G, McVey JH. et al. Molecular analysis of the genotype-phenotype relationship in factor VII deficiency. Hum Genet 2000; 107: 327-342.
  • 30 Elmahmoudi H, Ben-Lakhal F, Elborji W. et al. Identification of genetic defects underlying FVII deficiency in 10 patients belonging to eight unrelated families of the North provinces from Tunisia. Diagn Pathol 2012; 07: 92.
  • 31 Salcioglu Z, Akcay A, Sen HS. et al. Factor VII deficiency: a single-center experience. Clin Appl Thromb Haemost 2012; 18: 588-593.
  • 32 Fromovich-Amit Y, Zivelin A, Rosenberg N. et al. Characterization of mutations causing factor VII deficiency in 61 unrelated Israeli patients. J Thromb Haemost 2004; 02: 1774-1781.
  • 33 Mota L, Shetty S, Idicula-Thomas S. et al. Phenotypic and genotypic characterization of Factor VII deficiency patients from Western India. Clin Chim Acta 2009; 409: 106-111.
  • 34 Liu H, Wang HF, Cheng ZP. et al. Phenotypic and genotypic characterization of four factor VII deficiency patients from central China. Blood Coagul Fibrinolysis 2015; 26: 408-413.
  • 35 Napolitano M, Di Minno MN, Batorova A. et al. Women with congenital factor VII deficiency: clinical phenotype and treatment options from two international studies. Haemophilia 2016; 22: 752-759.
  • 36 Herrmann FH, Wulff K, Auerswald G. et al. Factor VII deficiency: clinical manifestation of 717 subjects from Europe and Latin America with mutations in the factor 7 gene. Haemophilia 2009; 15: 267-280.
  • 37 Di Minno MND, Dolce A, Mariani G. et al. Bleeding symptoms at disease presentation and prediction of ensuing bleeding in inherited FVII deficiency. Thromb Haemost 2013; 109: 1051-1059.
  • 38 Bernardi F, Marchetti G, Pinotti M. et al. Factor VII gene polymorphisms contribute about one third of the factor VII level variation in plasma. Arterioscler Thromb Vasc Biol 1996; 16: 72-76.
  • 39 Mariani G, Bernardi F. Factor VII Deficiency. Semin Thromb Haemost 2009; 35: 400-406.
  • 40 Pavlova A, Preisler B, Driesen J. et al. Congenital combined deficiency of coagulation factors VII and X--different genetic mechanisms. Haemophilia 2015; 21: 386-391.
  • 41 Rath M, Najm J, Sirb H. et al. Large deletions play a minor but essential role in congenital coagulation factor VII and X deficiencies. Hamostaseologie 2015; 35 (01) S36-42.
  • 42 Castaman G, Giacomelli SH, Mancuso ME. et al. Deep intronic variations may cause mild hemophilia A. J Thromb Haemost 2011; 09: 1541-1548.
  • 43 Pezeshkpoor B, Zimmer N, Marquardt N. et al. Deep intronic 'mutations' cause hemophilia A: application of next generation sequencing in patients without detectable mutation in F8 cDNA. J Thromb Haemost 2013; 11: 1679-1687.
  • 44 Ingerslev J, Kristensen HL. Clinical picture and treatment strategies in factor VII deficiency. Hemophilia 1998; 04: 689-696.
  • 45 Giansily-Blaizot M, Al Dieri R, Schved JF. Thrombin generation measurement in factor VII-depleted plasmas compared to inherited factor VII-deficient plasmas. Pathophysiol Haemost Thromb 2003; 33: 36-42.
  • 46 Greene LA, Goldenberg NA, Simpson ML. et al. Use of global assays to understand clinical phenotype in congenital factor VII deficiency. Haemophilia 2013; 19: 765-772.
  • 47 Tran HT, Tjønnfjord GE, Holme PA. Use of thromboelastography and thrombin generation assay to predict clinical phenotype in patients with severe FVII deficiency. Haemophilia 2014; 20: 141-146.