Homeopathy 2004; 93(04): 199-202
DOI: 10.1016/j.homp.2004.07.002
Original Paper
Copyright ©The Faculty of Homeopathy 2004

On the dynamics of water molecules at the protein solute interfaces

A Bernini
,
O Spiga
,
A Ciutti
,
S Chiellini
,
N Menciassi
,
V Venditti
,
N Niccolai

Subject Editor:
Further Information

Publication History

Received20 February 2004
revised04 May 2004

accepted05 July 2004

Publication Date:
20 December 2017 (online)

Abstract

Proteins, with the large variety of chemical groups they present at their molecular surface, are a class of molecules which can be very informative on most of the possible solute–solvent interactions. Hen egg white lysozyme has been used as a probe to investigate the complex solvent dynamics occurring at the protein surface, by analysing the results obtained from Nuclear Magnetic Resonance, X-ray diffractometry and Molecular Dynamics simulations. A consistent overall picture for the dynamics of water molecules close to the protein is obtained, suggesting that a rapid exchange occurs, in a picosecond timescale, among all the possible hydration surface sites both in solution and the solid state, excluding the possibility that solvent molecules can form liquid–crystal-like supramolecular adducts, which have been proposed as a molecular basis of ‘memory of water’.

 
  • References

  • 1 Rey L. Thermoluminescence of ultra-high dilutions of lithium chloride and sodium chloride. Physica A 2003; 323: 67-74.
  • 2 Tiezzi E. NMR evidence of a supramolecular structure of water. Ann Chim 2003; 93: 471-476.
  • 3 Sukul A., Sarkar P., Sinhababu S.P., Sukul N.C. Altered solution structure of alcoholic medium of potentized Nux vomica underlies its antialcoholic effect. Br Hom J 2000; 89: 73-77.
  • 4 Conte R.R., Berliocchi H., Lasne Y., Vernot G. Theory of High Dilutions and Experimental Aspects. Paris, France: Polytechnica; 1996
  • 5 Milgrom L.R., King K.R., Lee J., Pinkus A.S. On the investigation of homeopathic potencies using low resolution NMR T relaxation times. an experimental and critical survey of the work of Roland Conte et al. Br Hom J 2001; 90: 5-13.
  • 6 Aabel S., Fossheim S., Rise F. Nuclear magnetic resonance (NMR) studies of homeopathic solutions. Br Hom J 2001; 90: 14-20.
  • 7 Niccolai N., Spiga O., Bernini A. et al. NMR studies of protein hydration and TEMPOL accessibility. J Mol Biol 2003; 332: 437-447.
  • 8 Biswal B.K., Sukumar N., Vijayan M. Hydration, mobility and accessibility of lysozyme. structures of a pH 6.5 orthorombic form and its low-humidity variant and a comparative study involving 20 crystallographically independent molecules. Acta Crystollogr 2000; D56: 1110-1119.
  • 9 Sterpone F., Ceccarelli M., Marchi M. Dynamics of hydration in hen egg white lysozyme. J Mol Biol 2001; 311: 409-419.
  • 10 Merzel F., Smith J.C. Is the first hydration shell of lysozyme of higher density than bulk water. PNAS 2002; 99: 5378-5383.
  • 11 Johnson B.A., Blevins R.A. NMR view. a computer program for the visualization and analysis of NMR data. J Biomol NMR 1994; 4: 603-614.
  • 12 Wüthrich K. NMR of Proteins and Nucleic Acids. New York: Wiley; 1986. pp 130–154
  • 13 Dalvit C. Homonuclear 1D and 2D NMR experiments for the observation of solvent–solute interactions. J Magn Reson 1996; B112: 282-288.
  • 14 Lindahl E., Hess B., Van Der Spoel D. Gromacs 3.0. A package for molecular simulation and trajectory analysis. J Mol Mod 2001; 7: 306-317.
  • 15 Willis B.T.M., Pryor A.W. Thermal Vibrations in Crystallography. Cambridge: Cambridge University Press; 1975
  • 16 Koradi R., Billeter M., Wüthrich K. MOLMOL. a program for display and analysis of macromolecular structure. J Mol Graph 1996; 14: 51-55.
  • 17 Kumar A., Ernst R.R., Wüthrich K. A two-dimensional nuclear Overhauser enhancement (D NOE) experiment for the elucidation of complete proton–proton cross-relaxation networks in biological macromolecules. Biochem Biophys Res Commun 1980; 95: 1-6.
  • 18 Otting G. NMR studies of water bound to biological molecules. Prog NMR Spectrosc 1997; 31: 259-285.
  • 19 Sauter C., Otalora F., Gavira J.A., Vidal O., Giege R., Garcia-Ruiz J.M. Structure of tetragonal hen egg white lysozyme at 0.94 A from crystals grown by the counter-diffusion method. Acta Crystollogr 2001; 57: 1119-1126.
  • 20 Denisov V.P., Peters J., Hörlein H.D., Halle B. Using buried water molecules to explore the energy landscape of proteins. Nat Struct Biol 1996; 3: 505-509.
  • 21 Russo D., Baglioni P., Peroni E., Teixeira J. Hydration water dynamics of a completely hydrophobic oligopeptide Chem Phys 2003; 292: 235-245.
  • 22 Modig K., Liepinsh E., Otting G., Halle B. Dynamics of protein and peptide hydration. J Am Chem Soc 2004; 126: 102-114.
  • 23 Torre R., Bartolini P., Righini R. Structural relaxation in supercooled water by time-resolved spectroscopy. Nature 2004; 428: 296-299.
  • 24 Del Giudice E., Preparata G., Vitiello G. Water as a free electric dipole laser. Phys Rev Lett 1988; 61: 1085-1088.